IIT Publications Search

Publications
2025
Vignolo A., Baird T.J., Spiga F., Canevari C., Coretti A., Vuilleumier R., Cavalli A., Bonella S., Decherchi S.
A tale of two codes: CUDA vs OpenACC for mass-zero constrained dynamics
International Journal of High Performance Computing Applications
2025
Ghidini A., Cavalli A., Roux B.
Binding Free Energy Calculations Based on the Path Collective Variable along a String Pathway
Journal of Physical Chemistry B, vol. 129, (no. 27), pp. 6805-6816
2025
Fant A., Trova S., Monfrini E., Treves G., Musacchia F., Landuzzi F., Mandich P., Amoroso A., Sanges R., Pandolfini L., Cavallieri F., Valzania F., Fioravanti V., Di Rauso G., Brescia G., Valente E.M., Tiranti V., Romito L.M., Reale C., Garavaglia B., Elia A.E., Cavalli A., Di Fonzo A., Vecchi M., Gustincich S.
Compound Heterozygous Structural Variants in Cases with Unsolved PRKN-Associated Parkinson's Disease
Movement Disorders
2025
Fant A., Trova S., Monfrini E., Treves G., Musacchia F., Landuzzi F., Mandich P., Amoroso A., Sanges R., Pandolfini L., Cavalli A., Di Fonzo A., Vecchi M., Gustincich S.
Detection of hidden compound heterozygous structural variants in cases with unsolved typical PRKN-associated Parkinson's disease.
Movement Disorders
Article in Press Journal
2025
Chiappori F., Palma F.D., Cavalli A., de Rosa M., Viti F.
Dynamical features of smooth muscle actin pathological mutants: The arginine-257(258)-Cysteine cases
Computational and Structural Biotechnology Journal, vol. 27, pp. 753-764
2025
Marotta G., Massenzio F., Ortega J., Russo D., Penna I., Falchi F., Babini G., Petralla S., Scarpelli R., Roggiolani E., Fricker G., Rosini M., Cavalli A., Monti B., Minarini A., Basagni F.
Exploration of the Neuromodulatory Properties of Fyn and GSK-3β Kinases Exploiting 7-Azaindole-Based Inhibitors
Journal of Medicinal Chemistry, vol. 68, (no. 16), pp. 17130-17154
2025
Gözde F., Landuzzi F., Brambilla A., Charrance D., Furia F., Trova S., Peracino A., Camenisch G., Waldvogel D., Howard-McCombe J., Spelorzi Y., Henzen E., Bernagozzi A., Coppe A., Christille J.M., Vecchi M., Vozzi D., Cavalli A., Bassano B., Gustincich S., Croll D., Pandolfini L., Grossen C.
Hybridization load introduced by Alpine ibex hybrid swarms
Current Biology
Article in Press Journal
2025
Masi M., Poppi L., Previtali V., Nelson S.R., Wynne K., Varignani G., Falchi F., Veronesi M., Albanesi E., Tedesco D., De Franco F., Ciamarone A., Myers S.H., Ortega J.A., Bagnolini G., Ferrandi G., Farabegoli F., Tirelli N., Di Stefano G., Oliviero G., Walsh N., Roberti M., Girotto S., Cavalli A.
Investigating synthetic lethality and PARP inhibitor resistance in pancreatic cancer through enantiomer differential activity
Cell Death Discovery, vol. 11, (no. 1)
2025
Bollon J., Shortreed M.R., Jeffery E., Jordan B.T., Miller R., Cavalli A., Smith L.M., Dewey C.N., Sheynkman G.M., Tiberi S.
IsoBayes: A Bayesian approach for single-isoform proteomics inference
Bioinformatics, vol. 41, (no. 8)
2025
Martinez-Alonso E., Escobar-Peso A., Di Palma F., Cavalli A., Alcazar A.
ISQ201, a neuroprotective agent in ischemic stroke, is a novel activator of protein synthesis via allosteric binding to translation factor eIF4E
International Journal of Biological Macromolecules, vol. 328
2025
Abate C., Serra E., Rocchia W., Cavalli A., Decherchi S.
NanoShaperWeb: Molecular Surface and Pocket Detection Made Visual
Journal of Chemical Information and Modeling
2025
Spirito G., Trova S., Treves G., Franzese Canonico M., Fant A., Marangoni S., Furia F., Charrance D., Locci N., Gottardo S., Groppo F., Perseghin V., Toscano M., Bibbò E., Donetti Dontin S., Cargnelutti S., Colliard M., Rosina A., Beoni A.M., Bérard C., Coppe A., Landuzzi F., Musacchia F., Amoroso A., Sanges R., Cavalli A., Vecchi M., Obino L., Gustincich S.
New insights into neurodevelopmental disorders by genome sequencing of 100 families from Valle d’Aosta, Italy
NPJ Genomic Medicine
Article in Press Journal
2025
Serra E., Ghidini A., Decherchi S., Cavalli A.
Nonequilibrium Binding Free Energy Simulations: Minimizing Dissipation
Journal of Chemical Theory and Computation
2025
Serra E., Ghidini A., Aguti R., Bernetti M., Decherchi S., Cavalli A.
Path-Based Nonequilibrium Binding Free Energy Estimation, from Protein-Ligand to RNA-Ligand Binding
Journal of Chemical Information and Modeling, vol. 65, (no. 12), pp. 6057-6072
2025
Cerminara M., Spirito G., Pandolfini L., Boeri S., Rosti G., Mancardi M., Pisciotta L., Fontana M., Bianchi A., Ferrera L., Caroli F., Di Duca M., Cavalli A., Divizia M., De Grandis E., Trova S., Vozzi D., Sanges R., Nobili L., Zara F., Gustincich S., Puliti A.
Polygenic variants in DNA repair genes are associated with neurodevelopmental disorders, regression and increased burdens of somatic variants and short tandem repeat expansions.
Genetics in Medicine
Article in Press Journal