Publications
						
					2025
								Vignolo A., Baird T.J., Spiga F., Canevari C., Coretti A., Vuilleumier R., Cavalli A., Bonella S., Decherchi S.
								A tale of two codes: CUDA vs OpenACC for mass-zero constrained dynamics
								International Journal of High Performance Computing Applications
								
							2025
								Ghidini A., Cavalli A., Roux B.
								Binding Free Energy Calculations Based on the Path Collective Variable along a String Pathway
								Journal of Physical Chemistry B, vol. 129, (no. 27), pp. 6805-6816
								
							2025
								Fant A., Trova S., Monfrini E., Treves G., Musacchia F., Landuzzi F., Mandich P., Amoroso A., Sanges R., Pandolfini L., Cavallieri F., Valzania F., Fioravanti V., Di Rauso G., Brescia G., Valente E.M., Tiranti V., Romito L.M., Reale C., Garavaglia B., Elia A.E., Cavalli A., Di Fonzo A., Vecchi M., Gustincich S.
								Compound Heterozygous Structural Variants in Cases with Unsolved PRKN-Associated Parkinson's Disease
								Movement Disorders
								
							2025
								Fant A., Trova S., Monfrini E., Treves G., Musacchia F., Landuzzi F., Mandich P., Amoroso A., Sanges R., Pandolfini L., Cavalli A., Di Fonzo A., Vecchi M., Gustincich S.
								Detection of hidden compound heterozygous structural variants in cases with unsolved typical PRKN-associated Parkinson's disease.
								Movement Disorders
								
							
								
								
								    
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						2025
								Chiappori F., Palma F.D., Cavalli A., de Rosa M., Viti F.
								Dynamical features of smooth muscle actin pathological mutants: The arginine-257(258)-Cysteine cases
								Computational and Structural Biotechnology Journal, vol. 27, pp. 753-764
								
							2025
								Marotta G., Massenzio F., Ortega J., Russo D., Penna I., Falchi F., Babini G., Petralla S., Scarpelli R., Roggiolani E., Fricker G., Rosini M., Cavalli A., Monti B., Minarini A., Basagni F.
								Exploration of the Neuromodulatory Properties of Fyn and GSK-3β Kinases Exploiting 7-Azaindole-Based Inhibitors
								Journal of Medicinal Chemistry, vol. 68, (no. 16), pp. 17130-17154
								
							2025
								Gözde F., Landuzzi F., Brambilla A., Charrance D., Furia F., Trova S., Peracino A., Camenisch G., Waldvogel D., Howard-McCombe J., Spelorzi Y., Henzen E., Bernagozzi A., Coppe A., Christille J.M., Vecchi M., Vozzi D., Cavalli A., Bassano B., Gustincich S., Croll D., Pandolfini L., Grossen C.
								Hybridization load introduced by Alpine ibex hybrid swarms
								Current Biology
								
							
								
								
								    
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						2025
								Masi M., Poppi L., Previtali V., Nelson S.R., Wynne K., Varignani G., Falchi F., Veronesi M., Albanesi E., Tedesco D., De Franco F., Ciamarone A., Myers S.H., Ortega J.A., Bagnolini G., Ferrandi G., Farabegoli F., Tirelli N., Di Stefano G., Oliviero G., Walsh N., Roberti M., Girotto S., Cavalli A.
								Investigating synthetic lethality and PARP inhibitor resistance in pancreatic cancer through enantiomer differential activity
								Cell Death Discovery, vol. 11, (no. 1)
								
							2025
								Bollon J., Shortreed M.R., Jeffery E., Jordan B.T., Miller R., Cavalli A., Smith L.M., Dewey C.N., Sheynkman G.M., Tiberi S.
								IsoBayes: A Bayesian approach for single-isoform proteomics inference
								Bioinformatics, vol. 41, (no. 8)
								
							2025
								Martinez-Alonso E., Escobar-Peso A., Di Palma F., Cavalli A., Alcazar A.
								ISQ201, a neuroprotective agent in ischemic stroke, is a novel activator of protein synthesis via allosteric binding to translation factor eIF4E
								International Journal of Biological Macromolecules, vol. 328
								
							2025
								Abate C., Serra E., Rocchia W., Cavalli A., Decherchi S.
								NanoShaperWeb: Molecular Surface and Pocket Detection Made Visual
								Journal of Chemical Information and Modeling
								
							2025
								Spirito G., Trova S., Treves G., Franzese Canonico M., Fant A., Marangoni S., Furia F., Charrance D., Locci N., Gottardo S., Groppo F., Perseghin V., Toscano M., Bibbò E., Donetti Dontin S., Cargnelutti S., Colliard M., Rosina A., Beoni A.M., Bérard C., Coppe A., Landuzzi F., Musacchia F., Amoroso A., Sanges R., Cavalli A., Vecchi M., Obino L., Gustincich S.
								New insights into neurodevelopmental disorders by genome sequencing of 100 families from Valle d’Aosta, Italy
								NPJ Genomic Medicine
								
							
								
								
								    
										Article in Press
									
								
								
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						2025
								Serra E., Ghidini A., Decherchi S., Cavalli A.
								Nonequilibrium Binding Free Energy Simulations: Minimizing Dissipation
								Journal of Chemical Theory and Computation
								
							2025
								Serra E., Ghidini A., Aguti R., Bernetti M., Decherchi S., Cavalli A.
								Path-Based Nonequilibrium Binding Free Energy Estimation, from Protein-Ligand to RNA-Ligand Binding
								Journal of Chemical Information and Modeling, vol. 65, (no. 12), pp. 6057-6072
								
							2025
								Cerminara M., Spirito G., Pandolfini L., Boeri S., Rosti G., Mancardi M., Pisciotta L., Fontana M., Bianchi A., Ferrera L., Caroli F., Di Duca M., Cavalli A., Divizia M., De Grandis E., Trova S., Vozzi D., Sanges R., Nobili L., Zara F., Gustincich S., Puliti A.
								Polygenic variants in DNA repair genes are associated with neurodevelopmental disorders, regression and increased burdens of somatic variants and short tandem repeat expansions.
								Genetics in Medicine
								
							
								
								
								    
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